De hel vandaag

Masterthesis Systematische Theologi

Spectral and radiometric measurement requirements for inland, coastal and reef waters

This paper studies the measurement requirements of spectral resolution and radiometric sensitivity to enable the quantitative determination of water constituents and benthic parameters for the majority of optically deep and optically shallow waters on Earth. The spectral and radiometric variability is investigated by simulating remote sensing reflectance (Rrs) spectra of optically deep water for twelve inland water scenarios representing typical and extreme concentration ranges of phytoplankton, colored dissolved organic matter and non-algal particles. For optically shallow waters, Rrs changes induced by variable water depth are simulated for fourteen bottom substrate types, from lakes to coastal waters and coral reefs. The required radiometric sensitivity is derived for the conditions that the spectral shape of Rrs should be resolvable with a quantization of 100 levels and that measurable reflection differences at at least one wavelength must occur at concentration changes in water constituents of 10% and depth differences of 20 cm. These simulations are also used to derive the optimal spectral resolution and the most sensitive wavelengths. Finally, the Rrs spectra and their changes are converted to radiances and radiance differences in order to derive sensor (noise-equivalent radiance) and measurement requirements (signal-to-noise ratio) at the water surface and at the top of the atmosphere for a range of solar zenith angles

The costs and benefits of estimating T-1 of tissue alongside cerebral blood flow and arterial transit time in pseudo-continuous arterial spin labeling

Multi-post-labeling-delay pseudo-continuous arterial spin labeling (multi-PLD PCASL) allows for absolute quantification of the cerebral blood flow (CBF) as well as the arterial transit time (ATT). Estimating these perfusion parameters from multi-PLD PCASL data is a non-linear inverse problem, which is commonly tackled by fitting the single-compartment model (SCM) for PCASL, with CBF and ATT as free parameters. The longitudinal relaxation time of tissue T-1t is an important parameter in this model, as it governs the decay of the perfusion signal entirely upon entry in the imaging voxel. Conventionally, T-1t is fixed to a population average. This approach can cause CBF quantification errors, as T-1t can vary significantly inter- and intra-subject. This study compares the impact on CBF quantification, in terms of accuracy and precision, of either fixing T-1t, the conventional approach, or estimating it alongside CBF and ATT. It is shown that the conventional approach can cause a significant bias in CBF. Indeed, simulation experiments reveal that if T-1t is fixed to a value that is 10% off its true value, this may already result in a bias of 15% in CBF. On the other hand, as is shown by both simulation and real data experiments, estimating T-1t along with CBF and ATT results in a loss of CBF precision of the same order, even if the experiment design is optimized for the latter estimation problem. Simulation experiments suggest that an optimal balance between accuracy and precision of CBF estimation from multi-PLD PCASL data can be expected when using the two-parameter estimator with a fixed T-1t value between population averages of T-1t and the longitudinal relaxation time of blood T-1b

DELTA-MRI: Direct deformation Estimation from LongiTudinally Acquired k-space data

Longitudinal MRI is an important diagnostic imaging tool for evaluating the effects of treatment and monitoring disease progression. However, MRI, and particularly longitudinal MRI, is known to be time consuming. To accelerate imaging, compressed sensing (CS) theory has been applied to exploit sparsity, both on single image as on image sequence level. State-of-the-art CS methods however, are generally focused on image reconstruction, and consider analysis (e.g., alignment, change detection) as a post-processing step. In this study, we propose DELTA-MRI, a novel framework to estimate longitudinal image changes {\it directly} from a reference image and subsequently acquired, strongly sub-sampled MRI k-space data. In contrast to state-of-the-art longitudinal CS based imaging, our method avoids the conventional multi-step process of image reconstruction of subsequent images, image alignment, and deformation vector field computation. Instead, the set of follow-up images, along with motion and deformation vector fields that describe their relation to the reference image, are estimated in one go. Experiments show that DELTA-MRI performs significantly better than the state-of-the-art in terms of the normalized reconstruction error.Comment: 5 pages, 4 figures, Submitted to ISBI 202

A review of ocean color remote sensing methods and statistical techniques for the detection, mapping and analysis of phytoplankton blooms in coastal and open oceans

The need for more effective environmental monitoring of the open and coastal ocean has recently led to notable advances in satellite ocean color technology and algorithm research. Satellite ocean color sensors' data are widely used for the detection, mapping and monitoring of phytoplankton blooms because earth observation provides a synoptic view of the ocean, both spatially and temporally. Algal blooms are indicators of marine ecosystem health; thus, their monitoring is a key component of effective management of coastal and oceanic resources. Since the late 1970s, a wide variety of operational ocean color satellite sensors and algorithms have been developed. The comprehensive review presented in this article captures the details of the progress and discusses the advantages and limitations of the algorithms used with the multi-spectral ocean color sensors CZCS, SeaWiFS, MODIS and MERIS. Present challenges include overcoming the severe limitation of these algorithms in coastal waters and refining detection limits in various oceanic and coastal environments. To understand the spatio-temporal patterns of algal blooms and their triggering factors, it is essential to consider the possible effects of environmental parameters, such as water temperature, turbidity, solar radiation and bathymetry. Hence, this review will also discuss the use of statistical techniques and additional datasets derived from ecosystem models or other satellite sensors to characterize further the factors triggering or limiting the development of algal blooms in coastal and open ocean waters

A likelihood ratio test for functional MRI data analysis to account for colored noise

Abstract. Functional magnetic resonance (fMRI) data are often corrupted with colored noise. To account for this type of noise, many prewhitening and pre-coloring strategies have been proposed to process the fMRI time series prior to statistical inference. In this paper, a generalized likelihood ratio test for brain activation detection is proposed in which the temporal correlation structure of the noise is modelled as an autoregressive (AR) model. The order of the AR model is determined from experimental null data sets. Simulation tests reveal that, for a fixed false alarm rate, the proposed test is slightly (2-3%) better than current tests incorporating colored noise in terms of detection rate

Measuring freshwater aquatic ecosystems: The need for a hyperspectral global mapping satellite mission

AbstractFreshwater ecosystems underpin global water and food security, yet are some of the most endangered ecosystems in the world because they are particularly vulnerable to land management change and climate variability. The US National Research Council's guidance to NASA regarding missions for the coming decade includes a polar orbiting, global mapping hyperspectral satellite remote sensing mission, the Hyperspectral Infrared Imager (HyspIRI), to make quantitative measurements of ecosystem change. Traditionally, freshwater ecosystems have been challenging to measure with satellite remote sensing because they are small and spatially complex, require high fidelity spectroradiometry, and are best described with biophysical variables derived from high spectral resolution data. In this study, we evaluate the contribution of a hyperspectral global mapping satellite mission to measuring freshwater ecosystems. We demonstrate the need for such a mission, and evaluate the suitability and gaps, through an examination of the measurement resolution issues impacting freshwater ecosystem measurements (spatial, temporal, spectral and radiometric). These are exemplified through three case studies that use remote sensing to characterize a component of freshwater ecosystems that drive primary productivity. The high radiometric quality proposed for the HyspIRI mission makes it uniquely well designed for measuring freshwater ecosystems accurately at moderate to high spatial resolutions. The spatial and spectral resolutions of the HyspIRI mission are well suited for the retrieval of multiple biophysical variables, such as phycocyanin and chlorophyll-a. The effective temporal resolution is suitable for characterizing growing season wetland phenology in temperate regions, but may not be appropriate for tracking algal bloom dynamics, or ecosystem responses to extreme events in monsoonal regions. Global mapping missions provide the systematic, repeated measurements necessary to measure the drivers of freshwater biodiversity change. Archival global mapping missions with open access and free data policies increase end user uptake globally. Overall, an archival, hyperspectral global mapping mission uniquely meets the measurement requirements of multiple end users for freshwater ecosystem science and management

Supporting measurements or more averages? How to quantify cerebral blood flow most reliably in 5 minutes by arterial spin labeling

Purpose To determine whether sacrificing part of the scan time of pseudo-continuous arterial spin labeling (PCASL) for measurement of the labeling efficiency and blood T1 is beneficial in terms of CBF quantification reliability. Methods In a simulation framework, 5-minute scan protocols with different scan time divisions between PCASL data acquisition and supporting measurements were evaluated in terms of CBF estimation variability across both noise and ground truth parameter realizations taken from the general population distribution. The entire simulation experiment was repeated for a single-post-labeling delay (PLD), multi-PLD, and free-lunch time-encoded (te-FL) PCASL acquisition strategy. Furthermore, a real data study was designed for preliminary validation. Results For the considered population statistics, measuring the labeling efficiency and the blood T1 proved beneficial in terms of CBF estimation variability for any distribution of the 5-minute scan time compared to only acquiring ASL data. Compared to single-PLD PCASL without support measurements as recommended in the consensus statement, a 26%, 33%, and 42% reduction in relative CBF estimation variability was found for optimal combinations of supporting measurements with single-PLD, free-lunch, and multi-PLD PCASL data acquisition, respectively. The benefit of taking the individual variation of blood T1 into account was also demonstrated in the real data experiment. Conclusions Spending time to measure the labeling efficiency and the blood T1 instead of acquiring more averages of the PCASL data proves to be advisable for robust CBF quantification in the general population

Hybrid system modeling and identification of cell biology systems: perspectives and challenges

Abstract: Some perspectives and challenges in research on the crossing of system biology, hybrid system formulations and system identification are outlined. Emphasis is given on the hybrid, gray box modeling of interactions between the different abstract levels of organization typically recognized in (micro-)organisms, its associated identification problem and optimal experimental (input) design